Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mcambMelanoma cell adhesion molecule b. (617 aa)    
Predicted Functional Partners:
esyt3
Extended synaptotagmin-like protein 3.
    
 
 0.555
arhgef7a
Rho guanine nucleotide exchange factor (GEF) 7a.
    
 
 0.554
cd226
CD226 molecule.
     
  0.507
edil3a
EGF-like repeats and discoidin I-like domains 3a.
      
 0.490
mark2a
Non-specific serine/threonine protein kinase.
      
 0.486
prrx1a
Paired-related homeobox 1a.
   
 
 0.472
lama4
Laminin, alpha 4.
   
 
 0.459
lama5
Laminin, alpha 5.
   
 
 0.459
F1R9B8_DANRE
Si:ch211-241e1.3.
   
 
 0.459
lama3
Laminin, alpha 3.
   
 
 0.459
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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