rnpc3 protein (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rnpc3

RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences. (505 aa)

Predicted Functional Partners:

zmat5

0.997

snrnp35

0.993

zrsr2

0.992

zcrb1

0.989

sf3b1

0.977

snrpf

0.975

snrpg

0.974

snrpe

0.973

sf3b2

0.963

snrnp25

0.961

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rnpc3	sf3b1	ENSDARP00000019728	ENSDARP00000073029	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Splicing factor 3b, subunit 1.	0.977
rnpc3	sf3b2	ENSDARP00000019728	ENSDARP00000007002	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Splicing factor 3b, subunit 2.	0.963
rnpc3	snrnp25	ENSDARP00000019728	ENSDARP00000006492	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Small nuclear ribonucleoprotein 25.	0.961
rnpc3	snrnp35	ENSDARP00000019728	ENSDARP00000135151	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	U11/U12 small nuclear ribonucleoprotein 35 kDa protein.	0.993
rnpc3	snrpe	ENSDARP00000019728	ENSDARP00000050295	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.	0.973
rnpc3	snrpf	ENSDARP00000019728	ENSDARP00000134257	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Small nuclear ribonucleoprotein polypeptide F.	0.975
rnpc3	snrpg	ENSDARP00000019728	ENSDARP00000133036	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Small nuclear ribonucleoprotein G.	0.974
rnpc3	zcrb1	ENSDARP00000019728	ENSDARP00000067173	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Zinc finger CCHC-type and RNA-binding motif-containing protein 1.	0.989
rnpc3	zmat5	ENSDARP00000019728	ENSDARP00000051356	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Zinc finger matrin-type protein 5.	0.997
rnpc3	zrsr2	ENSDARP00000019728	ENSDARP00000075762	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine-rich 2.	0.992
sf3b1	rnpc3	ENSDARP00000073029	ENSDARP00000019728	Splicing factor 3b, subunit 1.	RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.	0.977
sf3b1	sf3b2	ENSDARP00000073029	ENSDARP00000007002	Splicing factor 3b, subunit 1.	Splicing factor 3b, subunit 2.	0.999
sf3b1	snrnp25	ENSDARP00000073029	ENSDARP00000006492	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein 25.	0.902
sf3b1	snrnp35	ENSDARP00000073029	ENSDARP00000135151	Splicing factor 3b, subunit 1.	U11/U12 small nuclear ribonucleoprotein 35 kDa protein.	0.981
sf3b1	snrpe	ENSDARP00000073029	ENSDARP00000050295	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.	0.988
sf3b1	snrpf	ENSDARP00000073029	ENSDARP00000134257	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein polypeptide F.	0.950
sf3b1	snrpg	ENSDARP00000073029	ENSDARP00000133036	Splicing factor 3b, subunit 1.	Small nuclear ribonucleoprotein G.	0.985
sf3b1	zcrb1	ENSDARP00000073029	ENSDARP00000067173	Splicing factor 3b, subunit 1.	Zinc finger CCHC-type and RNA-binding motif-containing protein 1.	0.992
sf3b1	zmat5	ENSDARP00000073029	ENSDARP00000051356	Splicing factor 3b, subunit 1.	Zinc finger matrin-type protein 5.	0.984
sf3b1	zrsr2	ENSDARP00000073029	ENSDARP00000075762	Splicing factor 3b, subunit 1.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine-rich 2.	0.968

page 1 of 6

Server load: low (12%) [HD]

Permalink

Network

Co-occurrence

Experiments

Co-expression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About