STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c1ql3aComplement component 1, q subcomponent-like 3a. (267 aa)    
Predicted Functional Partners:
adgrb3
Adhesion G protein-coupled receptor B3; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.747
mdga1
MAM domain-containing glycosylphosphatidylinositol anchor 1.
    
 
 0.730
fam135a
Family with sequence similarity 135 member A.
      
 0.670
nbeal1
Neurobeachin-like 1.
      
 0.662
glyr1
Putative oxidoreductase GLYR1; May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling; Belongs to the HIBADH-related family. NP60 subfamily.
      
 0.662
camk2b
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.
      
 0.563
cntn3a.1
Contactin 3a, tandem duplicate 1.
   
  
 0.558
ENSDARP00000131359
Uncharacterized protein.
   
  
 0.558
SYNPR
Si:dkey-30j16.3.
    
 
 0.553
camk2b1
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1.
      
 0.553
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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