c1d protein (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
c1d	exosc1	ENSDARP00000020042	ENSDARP00000078068	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome component 1.	0.997
c1d	exosc10	ENSDARP00000020042	ENSDARP00000122676	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome component 10.	0.999
c1d	exosc2	ENSDARP00000020042	ENSDARP00000124376	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome component 2.	0.998
c1d	exosc4	ENSDARP00000020042	ENSDARP00000138743	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome component 4.	0.997
c1d	exosc5	ENSDARP00000020042	ENSDARP00000059351	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome component 5.	0.996
c1d	exosc6	ENSDARP00000020042	ENSDARP00000052347	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome complex component MTR3; Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events.	0.998
c1d	exosc7	ENSDARP00000020042	ENSDARP00000139168	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome component 7.	0.995
c1d	exosc8	ENSDARP00000020042	ENSDARP00000090326	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome component 8.	0.995
c1d	exosc9	ENSDARP00000020042	ENSDARP00000005262	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	Exosome complex component RRP45; Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cyto [...]	0.997
c1d	mphosph6	ENSDARP00000020042	ENSDARP00000066986	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	M-phase phosphoprotein 6.	0.997
exosc1	c1d	ENSDARP00000078068	ENSDARP00000020042	Exosome component 1.	Nuclear nucleic acid-binding protein C1D; Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.	0.997
exosc1	exosc10	ENSDARP00000078068	ENSDARP00000122676	Exosome component 1.	Exosome component 10.	0.999
exosc1	exosc2	ENSDARP00000078068	ENSDARP00000124376	Exosome component 1.	Exosome component 2.	0.999
exosc1	exosc4	ENSDARP00000078068	ENSDARP00000138743	Exosome component 1.	Exosome component 4.	0.999
exosc1	exosc5	ENSDARP00000078068	ENSDARP00000059351	Exosome component 1.	Exosome component 5.	0.999
exosc1	exosc6	ENSDARP00000078068	ENSDARP00000052347	Exosome component 1.	Exosome complex component MTR3; Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events.	0.999
exosc1	exosc7	ENSDARP00000078068	ENSDARP00000139168	Exosome component 1.	Exosome component 7.	0.999
exosc1	exosc8	ENSDARP00000078068	ENSDARP00000090326	Exosome component 1.	Exosome component 8.	0.999
exosc1	exosc9	ENSDARP00000078068	ENSDARP00000005262	Exosome component 1.	Exosome complex component RRP45; Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cyto [...]	0.999
exosc1	mphosph6	ENSDARP00000078068	ENSDARP00000066986	Exosome component 1.	M-phase phosphoprotein 6.	0.993

page 1 of 6

Server load: low (12%) [HD]

Share

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About