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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prelid3bChromosome 20 open reading frame 45. (193 aa)    
Predicted Functional Partners:
triap1
TP53-regulated inhibitor of apoptosis 1.
    
 
 0.970
znf831
Zinc finger protein 831.
      
 0.769
slc25a33
Solute carrier family 25 member 33; Mitochondrial transporter that imports/exports pyrimidine nucleotides into and from mitochondria which participates in dendritic cell endocytosis; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.667
stard7
StAR-related lipid transfer (START) domain-containing 7.
   
  
 0.647
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
      
 0.646
TP53I3
Tumor protein p53 inducible protein 3.
      
 0.644
adtrp1
Androgen-dependent TFPI-regulating protein 1.
   
  
 0.602
slc25a43
Solute carrier family 25 member 43.
   
  
 0.580
prelid1a
PRELI domain-containing 1a.
  
 
0.571
etv7
ETS variant transcription factor 7.
      
 0.554
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.