STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ehd3EH-domain-containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (535 aa)    
Predicted Functional Partners:
fam167b
Family with sequence similarity 167 member B.
      
 0.806
rnf145b
RING finger protein 145.
   
  
 0.746
rbsn
Rabenosyn, RAB effector.
    
 0.736
arhgef3
Rho guanine nucleotide exchange factor (GEF) 3.
      
 0.691
ak3
GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities.
      
 0.663
rab11fip2
RAB11 family-interacting protein 2 (class I).
    
 
 0.637
micall1b.2
MICAL-like 1b, duplicate 2.
    
 
 0.624
atp5f1e
ATP synthase F1 subunit epsilon.
   
  
 0.593
rab5aa
RAB5A, member RAS oncogene family, a.
     
 0.582
kcnt2
Potassium channel, subfamily T, member 2.
      
 0.560
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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