STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tial1TIA1 cytotoxic granule-associated RNA-binding protein-like 1. (370 aa)    
Predicted Functional Partners:
g3bp1
GTPase-activating protein (SH3 domain)-binding protein 1.
   
 
 0.776
srsf6b
Serine and arginine-rich-splicing factor 6b.
  
 
 0.761
ddx61
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
  
 
 0.753
nubp1
Cytosolic Fe-S cluster assembly factor nubp1; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The nubp1-nubp2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP1/NBP35 subfamily.
   
  
 0.719
dcp1b
Decapping mRNA 1B.
   
 
 0.712
rbpms2a
RNA-binding protein, mRNA-processing factor 2a; RNA-binding protein involved in the regulation of smooth muscle cell differentiation and proliferation in the gastrointestinal system (By similarity). RNA-binding protein localized in Balbiani body (electron-dense aggregates in the oocyte) and germ plasm during oogenesis, and may be required to maintain germ plasm mRNA translational repression. Translational regulator during topographic map formation in the visual system. Establishes oocyte polarity through interaction with Bucky ball (BUC) (Probable). ECO:0000250|UniProtKB:Q9W6I1.
    
 
 0.711
wdfy1
WD repeat and FYVE domain-containing 1.
    
 
 0.693
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 
 0.680
dcp2
DCP2 decapping enzyme homolog (S. cerevisiae).
   
  
 0.658
srsf3a
Serine and arginine-rich-splicing factor 3a.
   
 
 0.652
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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