lratd1 protein (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDARP00000132615	lratd1	ENSDARP00000132615	ENSDARP00000020319	Si:ch211-79l17.1.	Family with sequence similarity 84, member A.	0.609
ENSDARP00000132615	rsad1	ENSDARP00000132615	ENSDARP00000101526	Si:ch211-79l17.1.	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity (By similarity). Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl- L-methionine (By similarity).	0.451
ENSDARP00000138451	lratd1	ENSDARP00000138451	ENSDARP00000020319	Si:ch1073-83b15.1.	Family with sequence similarity 84, member A.	0.609
ENSDARP00000138451	rsad1	ENSDARP00000138451	ENSDARP00000101526	Si:ch1073-83b15.1.	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity (By similarity). Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl- L-methionine (By similarity).	0.451
agbl4	agbl4-2	ENSDARP00000115878	ENSDARP00000131925	ATP/GTP-binding protein-like 4.	ATP/GTP-binding protein-like 4.	0.900
agbl4	lratd1	ENSDARP00000115878	ENSDARP00000020319	ATP/GTP-binding protein-like 4.	Family with sequence similarity 84, member A.	0.598
agbl4-2	agbl4	ENSDARP00000131925	ENSDARP00000115878	ATP/GTP-binding protein-like 4.	ATP/GTP-binding protein-like 4.	0.900
agbl4-2	lratd1	ENSDARP00000131925	ENSDARP00000020319	ATP/GTP-binding protein-like 4.	Family with sequence similarity 84, member A.	0.598
ankrd55	lratd1	ENSDARP00000130140	ENSDARP00000020319	Ankyrin repeat domain 55.	Family with sequence similarity 84, member A.	0.744
lratd1	ENSDARP00000132615	ENSDARP00000020319	ENSDARP00000132615	Family with sequence similarity 84, member A.	Si:ch211-79l17.1.	0.609
lratd1	ENSDARP00000138451	ENSDARP00000020319	ENSDARP00000138451	Family with sequence similarity 84, member A.	Si:ch1073-83b15.1.	0.609
lratd1	agbl4	ENSDARP00000020319	ENSDARP00000115878	Family with sequence similarity 84, member A.	ATP/GTP-binding protein-like 4.	0.598
lratd1	agbl4-2	ENSDARP00000020319	ENSDARP00000131925	Family with sequence similarity 84, member A.	ATP/GTP-binding protein-like 4.	0.598
lratd1	ankrd55	ENSDARP00000020319	ENSDARP00000130140	Family with sequence similarity 84, member A.	Ankyrin repeat domain 55.	0.744
lratd1	matk	ENSDARP00000020319	ENSDARP00000144785	Family with sequence similarity 84, member A.	Tyrosine-protein kinase.	0.817
lratd1	n6amt1	ENSDARP00000020319	ENSDARP00000157105	Family with sequence similarity 84, member A.	N-6 adenine-specific DNA methyltransferase 1.	0.720
lratd1	plaat1	ENSDARP00000020319	ENSDARP00000140448	Family with sequence similarity 84, member A.	Phospholipase A and acyltransferase 1.	0.799
lratd1	rsad1	ENSDARP00000020319	ENSDARP00000101526	Family with sequence similarity 84, member A.	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity (By similarity). Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl- L-methionine (By similarity).	0.611
lratd1	xkr9	ENSDARP00000020319	ENSDARP00000107372	Family with sequence similarity 84, member A.	XK-related protein.	0.961
matk	lratd1	ENSDARP00000144785	ENSDARP00000020319	Tyrosine-protein kinase.	Family with sequence similarity 84, member A.	0.817

page 1 of 2

Server load: low (14%) [HD]

Share

Network

Fusion

Textmining

Co-occurrence

Experiments

Neighborhood

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About