STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfpqSplicing factor proline/glutamine-rich. (638 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.831
ptk6b
Tyrosine-protein kinase.
    
  0.755
ptk6a
Tyrosine-protein kinase.
    
  0.755
fus
FUS RNA-binding protein.
   
 
 0.679
sin3aa
SIN3 transcription regulator family member Aa.
   
 
 0.652
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
   
 
 0.642
hnrnpl2
Heterogeneous nuclear ribonucleoprotein L2.
   
 
 0.624
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  
 0.590
srsf4
Serine and arginine-rich-splicing factor 4.
   
 
 0.587
prcc
Proline-rich mitotic checkpoint control factor.
   
  
 0.586
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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