STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serpina10aSerpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10a; Belongs to the serpin family. (391 aa)    
Predicted Functional Partners:
LOC110440055
Leucyl-tRNA synthetase a.
    
 
 0.800
pth2rb
Si:dkeyp-4h4.1; Belongs to the G-protein coupled receptor 2 family.
      
 0.782
ms4a17a.8
Membrane-spanning 4-domains, subfamily A, member 17A.8.
      
 0.720
cyp2p9
Cytochrome P450, family 2, subfamily P, polypeptide 9; Belongs to the cytochrome P450 family.
      
 0.719
zgc:66101
Serine/threonine-protein kinase SIK3 homolog.
      
 0.600
pth2ra
Parathyroid hormone 2 receptor; Belongs to the G-protein coupled receptor 2 family.
      
 0.595
lars1b
Leucyl-tRNA synthetase b.
    
 
 0.570
slc6a19b
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.504
fam20cb
FAM20C golgi-associated secretory pathway kinase b.
    
  0.503
lars2
Leucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.449
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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