STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf128aRing finger protein 128a. (389 aa)    
Predicted Functional Partners:
otub1a
Ubiquitin thioesterase.
    
 0.909
usp2b
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.726
otub1b
Ubiquitin thioesterase.
    
 0.693
usp8
Ubiquitin-specific peptidase 8; Belongs to the peptidase C19 family.
    
 0.673
usp38
Ubiquitin-specific peptidase 38; Belongs to the peptidase C19 family.
   
  
 0.647
dyrk2
Dual-specificity tyrosine-(Y)-phosphorylation-regulated kinase 2.
      
 0.644
rnf41
E3 ubiquitin-protein ligase NRDP1; Acts as E3 ubiquitin-protein ligase and regulates the degradation of target proteins.
   
  
 0.628
dyrk3
Dual-specificity tyrosine phosphorylation-regulated kinase 3.
      
 0.624
calua
Calumenin-A; Involved in regulation of vitamin K-dependent carboxylation of multiple N-terminal glutamate residues. Seems to inhibit gamma- carboxylase ggcx. Binds 7 calcium ions with a low affinity (By similarity).
      
 0.583
rnf144b
RBR-type E3 ubiquitin transferase.
   
  
 0.497
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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