STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adgrv1Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system. (6198 aa)    
Predicted Functional Partners:
whrna
Whirlin a.
      
 0.993
ush2a
Usher syndrome 2A (autosomal recessive, mild).
      
 0.991
pdzd7a
PDZ domain-containing 7a.
    
 
 0.988
whrnb
Whirlin b.
      
 0.974
ush1c
Usher syndrome 1C (Autosomal recessive, severe).
    
 
 0.971
ENSDARP00000060652
Si:ch211-57i17.5.
      
 0.962
ush1gb
Usher syndrome 1Gb (autosomal recessive).
    
 
 0.937
cdh23
Cadherin-related 23.
      
 0.933
cdh23-2
Cadherin-related 23.
      
 0.912
clrn1
Clrn1 protein.
   
  
 0.875
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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