STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nqo1NAD(P)H dehydrogenase, quinone 1. (275 aa)    
Predicted Functional Partners:
ggcx
Gamma-glutamyl carboxylase.
     
 0.941
vkorc1
Vitamin K epoxide reductase complex, subunit 1.
     
 0.938
vkorc1l1
Vitamin K epoxide reductase complex, subunit 1-like 1.
     
 0.927
odc1
Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.920
cryz
Crystallin, zeta (quinone reductase).
     
 0.918
gclc
Glutamate-cysteine ligase, catalytic subunit.
   
  
 0.911
nfe2l2a
Nuclear factor (Erythroid-derived 2)-like 2.
   
 
 0.885
hmox1a
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
      
 0.883
gclm
Glutamate-cysteine ligase, modifier subunit.
  
  
 0.869
tmco3
Transmembrane and coiled-coil domains 3.
  
 
 0.845
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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