Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
capns1bCalpain, small subunit 1 b. (213 aa)    
Predicted Functional Partners:
cast
Calpastatin.
   
 0.939
capn5b
Calpain 5b; Belongs to the peptidase C2 family.
 
 
 0.694
capn5a
Calpain 5a; Belongs to the peptidase C2 family.
 
 
 0.693
zgc:162184
Zgc:162184; Belongs to the peptidase C2 family.
 
 
  0.666
capn7
Calpain 7; Belongs to the peptidase C2 family.
   
 0.660
E7F0H3_DANRE
Si:ch211-202f3.4; Belongs to the peptidase C2 family.
 
 
  0.655
plpp3
Phospholipid phosphatase 3.
      
 0.623
si:dkey-26g8.5
MGC174857 protein; Belongs to the peptidase C1 family.
   
  
 0.615
zgc:174855
Im:6910535 protein; Belongs to the peptidase C1 family.
   
  
 0.615
E7F8Y7_DANRE
Si:dkey-239j18.3; Belongs to the peptidase C1 family.
   
  
 0.615
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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