Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
srsf6bSerine and arginine-rich-splicing factor 6b. (355 aa)    
Predicted Functional Partners:
nxf1
Nuclear RNA export factor 1.
   
 0.930
zgc:153681
Zgc:153681.
   
 0.930
srpk1b
SRSF protein kinase 1b.
    
 0.917
tra2a
Transformer 2 alpha homolog.
  
0.883
srsf9
Serine and arginine-rich-splicing factor 9.
  
0.879
srsf1a
Serine/arginine-rich splicing factor 1A; May play a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Belongs to the splicing factor SR family.
  
0.839
srpk1a
SRSF protein kinase 1a.
    
 0.837
srsf10b
Serine and arginine-rich-splicing factor 10b.
   
 0.826
tra2b
Transformer 2 beta homolog.
  
0.812
srsf7a
Serine and arginine-rich-splicing factor 7a.
   
0.810
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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