Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mfge8aMilk fat globule-EGF factor 8 protein a. (478 aa)    
Predicted Functional Partners:
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
     
  0.950
mfge8b
Milk fat globule-EGF factor 8 protein b.
     
  0.950
itga5
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
     
  0.723
lim2.4
Lens intrinsic membrane protein 2.4.
     
 0.665
cspg5b
Chondroitin sulfate proteoglycan 5b.
    
 
 0.574
itga2b
Integrin, alpha 2b (Platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B); Belongs to the integrin alpha chain family.
     
  0.561
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
     
  0.561
fam20cb
FAM20C golgi-associated secretory pathway kinase b.
    
  0.514
foxg1b
Forkhead box G1b.
    
 
 0.500
ompa
Olfactory marker protein a.
   
  
 0.471
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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