STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chgaChromogranin A. (369 aa)    
Predicted Functional Partners:
ccz1
Vacuolar fusion protein CCZ1 homolog.
    
 
 0.864
syt14b
Synaptotagmin XIVb.
      
 0.801
pcsk1nl
Proprotein convertase subtilisin/kexin type 1 inhibitor,-like.
   
  
 0.687
rab39bb
RAB39B, member RAS oncogene family b.
   
  
 0.653
cpa6
Carboxypeptidase A6.
      
 0.581
LOC100147849
Mucin 5.3.
      
 0.542
dbh
Dopamine beta-hydroxylase (dopamine beta-monooxygenase).
      
 0.540
syn2a
Synapsin IIa.
   
    0.531
cpe
Carboxypeptidase E.
   
  
 0.483
Muc2.1
Uncharacterized protein.
      
 0.479
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.