Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phb2bProhibitin. (303 aa)    
Predicted Functional Partners:
phb
Prohibitin.
  
 
0.991
stoml2
Stomatin (EPB72)-like 2.
   
 0.968
c1qbp
Complement component 1, q subcomponent-binding protein.
   
 
 0.960
gabarapl2
GABA(A) receptor-associated protein-like 2.
   
 0.923
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.916
zgc:92606
Zgc:92606.
   
 0.916
map1lc3cl
Microtubule-associated protein 1 light chain 3 gamma,-like.
   
 0.916
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.916
arfgef3
ARFGEF family member 3.
    
 
 0.901
pmpcb
Peptidase (mitochondrial-processing) beta; Belongs to the peptidase M16 family.
  
 0.894
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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