STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ilf2Interleukin enhancer-binding factor 2 homolog; Appears to function predominantly as a heterodimeric complex with ILF3. This complex may function to regulate transcription of undefined genes (By similarity). (387 aa)    
Predicted Functional Partners:
ilf3b
Interleukin enhancer-binding factor 3 homolog; RNA-binding protein that plays an essential role in the biogenesis of circular RNAs (circRNAs) which are produced by back- splicing circularization of pre-mRNAs. Within the nucleus, promotes circRNAs processing by stabilizing the regulatory elements residing in the flanking introns of the circularized exons. Plays thereby a role in the back-splicing of a subset of circRNAs. As a consequence, participates in a wide range of transcriptional and post- transcriptional processes. Binds to poly-U elements and AU-rich elements (AREs) in the 3'-UT [...]
   
 
0.988
zgc:55733
Zgc:55733.
   
 
 0.848
hnrnpc
Heterogeneous nuclear ribonucleoprotein C.
   
 
 0.840
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.833
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 
 0.825
alyref
Aly/REF export factor.
   
  
 0.800
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
   0.765
ilf3a
Interleukin enhancer-binding factor 3a.
   
 
0.727
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 
 0.724
tardbp
TAR DNA-binding protein.
   
 
 0.717
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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