STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ascl1bAchaete-scute homolog 1b; Transcriptional regulator. May mediate transcription activation by binding to the E box-containing promoter (By similarity). Involved in neurogenesis. Involved in maintaining rhombomere boundaries in the hindbrain, probably via up-regulation of delta expression. May mediate transcription activation by binding to the E box-containing promoter. (195 aa)    
Predicted Functional Partners:
hydin
HYDIN axonemal central pair apparatus protein.
      
 0.697
tcf3b
Transcription factor 3b.
   
 
 0.582
tcf3a
Transcription factor 3a.
   
 
 0.581
tcf12
Transcription factor 12.
   
 
 0.581
ENSDARP00000150042
Uncharacterized protein.
   
 
 0.581
TCF4
Transcription factor 4.
   
 
 0.581
dlx1a
Homeobox protein Dlx1a.
   
  
 0.574
her6
Hairy-related 6.
   
 
 0.488
her12
BHLH transcription factor.
   
 
 0.486
phox2a
Paired-like homeobox 2A.
   
 
 0.463
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (26%) [HD]