Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
syngr3aSynaptogyrin. (228 aa)    
Predicted Functional Partners:
caskin1
CASK-interacting protein 1.
   
  
 0.691
fahd1
Fumarylacetoacetate hydrolase domain-containing 1.
      
 0.684
bricd5
BRICHOS domain-containing 5.
      
 0.684
tbl3
Transducin beta-like 3.
      
 0.662
synpr
Synpr protein.
    
 
 0.620
syt1b
Novel protein similar to vertebrate synaptotagmin I (SYT1).
   
  
 0.614
rnf151
Ring finger protein 151.
      
 0.595
syt7a
Synaptotagmin VIIa.
   
  
 0.594
syt1a
Synaptotagmin Ia.
   
  
 0.594
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
  
 0.587
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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