Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rtcaRNA terminal phosphate cyclase domain 1. (363 aa)    
Predicted Functional Partners:
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
  
  
 0.955
pwp2h
PWP2 small subunit processome component.
   
 
 0.916
imp4
IMP4, U3 small nucleolar ribonucleoprotein, homolog (Yeast).
   
 
 0.911
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.906
utp3
UTP3 small subunit processome component.
   
 
 0.894
noc4l
Nucleolar complex protein 4 homolog.
   
 
 0.893
bysl
Bystin-like.
   
 
 0.888
dph5
Diphthamide biosynthesis 5.
   
  
 0.888
wdr36
WD repeat domain 36.
   
 
 0.886
tbl3
Transducin beta-like 3.
   
 
 0.886
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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