STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhlhe40Basic helix-loop-helix family, member e40. (403 aa)    
Predicted Functional Partners:
nr1d1
Nuclear receptor subfamily 1, group d, member 1.
   
  
 0.849
arntl1a
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
 
 0.845
nr1d2a
Nuclear receptor subfamily 1, group D, member 2a.
   
 
 0.821
per2
Period circadian clock 2.
   
 
 0.807
nfil3-6
Nuclear factor, interleukin 3-regulated, member 6.
   
 
 0.767
nfil3-5
Nuclear factor, interleukin 3-regulated, member 5.
    
 
 0.748
per1b
Period homolog 1b (Drosophila).
   
 
 0.743
nfil3
Nuclear factor interleukin-3-regulated protein; May act as a transcriptional regulator of a number of proteins of the circadian clock.
    
 
 0.725
per3
Period circadian clock 3.
   
 
 0.696
nr1d4a
Nuclear receptor subfamily 1, group D, member 4a.
      
 0.691
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.