STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhlhe40Basic helix-loop-helix family, member e40. (403 aa)    
Predicted Functional Partners:
bhlhe41
Novel protein similar to vertebrate basic helix-loop-helix domain containing, class B, 3 (BHLHB3).
  
0.969
npas2
BHLH-PAS transcription factor.
    
 0.958
clocka
Clock circadian regulator a.
    
 0.954
arntl1a
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
 0.945
nr1d1
Nuclear receptor subfamily 1, group d, member 1.
   
  
 0.892
arntl2
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
 0.891
arntl1b
Aryl hydrocarbon receptor nuclear translocator-like 1b.
    
 0.874
nr1d2a
Nuclear receptor subfamily 1, group D, member 2a.
    
 
 0.839
clockb
Clock circadian regulator b.
    
 0.834
per2
Period circadian clock 2.
   
 
 0.746
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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