Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pex3Peroxisomal biogenesis factor 3. (364 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
   
 0.998
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 0.993
pex16
Peroxisomal membrane protein PEX16; Involved in peroxisome biogenesis. Belongs to the peroxin-16 family.
   
 0.991
pex13
Peroxisomal biogenesis factor 13.
   
 0.986
pex14
Peroxisomal biogenesis factor 14.
   
 0.967
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 0.944
pex26
Peroxisomal biogenesis factor 26.
   
 0.936
abcd3a
ATP-binding cassette, sub-family D (ALD), member 3a.
   
 0.935
pex11a
Peroxisomal biogenesis factor 11 alpha.
   
 
 0.906
pex5la
Peroxisomal biogenesis factor 5-like a.
   
 
 0.896
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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