STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brd9Bromodomain-containing protein 9; Plays a role in chromatin remodeling and regulation of transcription. Acts as a chromatin reader that recognizes and binds acylated histones: binds histones that are acetylated and/or butyrylated. (631 aa)    
Predicted Functional Partners:
arid2
AT-rich interactive domain 2 (ARID, RFX-like).
   
 
 0.953
phf10
PHD finger protein 10; Involved in transcription activity regulation by chromatin remodeling in the context of the neural progenitors-specific chromatin remodeling complex (npBAF complex). May play a role in the proliferation of neural progenitors (By similarity).
    
 
 0.929
smarce1
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily e, member 1.
   
 
 0.916
pbrm1
Polybromo 1.
   
 
0.914
smarca4a
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a, member 4a.
   
 
 0.882
banf1
Barrier-to-autointegration factor; Plays fundamental roles in nuclear assembly, chromatin organization, gene expression and gonad development. May potently compress chromatin structure and be involved in membrane recruitment and chromatin decondensation during nuclear assembly. Contains 2 non- specific dsDNA-binding sites which may promote DNA cross-bridging (By similarity).
      
 0.816
smarcc2
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily c, member 2.
   
 
 0.791
pbrm1l
Polybromo 1,-like.
   
 
0.783
actl6a
Actin-like 6A; Belongs to the actin family.
   
 
 0.753
smarcb1b
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 
 0.753
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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