Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
arl5cADP-ribosylation factor-like 5C; Belongs to the small GTPase superfamily. Arf family. (179 aa)    
Predicted Functional Partners:
gtf3c5
General transcription factor IIIC, polypeptide 5.
      
 0.781
fam107b
Family with sequence similarity 107 member B.
   
 0.627
tsc22d3
TSC22 domain family, member 3.
   
 
 0.623
hivep3a
HIVEP zinc finger 3a.
    
 
 0.598
slc25a48
Solute carrier family 25 member 48.
      
 0.594
pik3r3a
Phosphoinositide-3-kinase, regulatory subunit 3a (gamma).
   
 0.593
tsc22d3-3
Si:ch211-220e11.3.
    
 
 0.576
tsc22d3-2
Zgc:64189.
    
 
 0.574
gbf1
Golgi brefeldin A-resistant guanine nucleotide exchange factor 1.
    
 
 0.541
nsun6
NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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