STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lamc1Laminin subunit gamma-1; Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. (1593 aa)    
Predicted Functional Partners:
lamb1a
Laminin, beta 1a.
   
 
0.937
cd44b
CD44 molecule (Indian blood group) b.
     
 0.905
ENSDARP00000145314
Uncharacterized protein.
 
 
 
 0.853
Itga7
Uncharacterized protein.
   
 0.833
lama2
Laminin, alpha 2.
   
 
0.832
itga6a
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
   
 0.830
itga6b
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.813
itga6l
Integrin, alpha 6,-like; Belongs to the integrin alpha chain family.
   
 0.812
itgb1a
Integrin beta; Belongs to the integrin beta chain family.
   
 0.806
itgb1b
Integrin beta; Belongs to the integrin beta chain family.
   
 0.799
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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