Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traipTRAF-interacting protein. (453 aa)    
Predicted Functional Partners:
neil3
Nei-like DNA glycosylase 3.
   
  
 0.900
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 
 0.885
fancd2
FA complementation group D2.
   
 
 0.828
zgc:77287
Zgc:77287.
   
  
 0.742
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.741
stap2a
Signal transducing adaptor family member 2a.
      
 0.737
nsmce2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
      
 0.720
sprtn
SprT-like N-terminal domain.
      
 0.708
rnf216
Ring finger protein 216.
   
  
 0.707
ubxn7
UBX domain protein 7.
   
  
 0.702
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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