STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfsp2Beaded filament structural protein 2, phakinin; Belongs to the intermediate filament family. (438 aa)    
Predicted Functional Partners:
BFSP1
Beaded filament structural protein 1.
   
 
 0.989
cryba1a
Crystallin, beta A1a; Belongs to the beta/gamma-crystallin family.
   
  
 0.856
crybb2
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
   
  
 0.836
crybb3
Crystallin, beta B3; Belongs to the beta/gamma-crystallin family.
   
 
 0.834
gja3
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
   
  
 0.832
mipa
Major intrinsic protein of lens fiber 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.809
cryaa
Crystallin, alpha A; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.804
cryba4
Crystallin, beta A4; Belongs to the beta/gamma-crystallin family.
   
  
 0.804
mipb
Major intrinsic protein of lens fiber b; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.786
crybb1
Crystallin, beta B1; Belongs to the beta/gamma-crystallin family.
   
 
 0.777
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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