STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnnc1aTroponin C type 1a (slow). (161 aa)    
Predicted Functional Partners:
tnnt2a
Troponin T type 2a (cardiac).
   
 0.992
tnnt2e
Novel slow skeletal troponin T family protein.
   
 0.978
tnnt2d
Troponin T2d, cardiac.
   
 0.974
tnnt2c
Troponin T1, skeletal, slow.
   
 0.968
tnnt2b
Troponin T type 2b (cardiac).
   
 0.951
tnnc1b
Troponin C type 1b (slow).
  
 
0.923
tnnt3a
Troponin T type 3a (skeletal, fast).
   
 0.906
tnni1a
Troponin I type 1a (skeletal, slow).
   
 0.905
tnni1b
Troponin I type 1b (skeletal, slow).
   
 0.901
tnnt1
Troponin T type 1 (skeletal, slow).
   
 0.823
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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