STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yipf3Protein YIPF3; Involved in the maintenance of the Golgi structure. May play a role in hematopoiesis (By similarity); Belongs to the YIP1 family. (344 aa)    
Predicted Functional Partners:
yipf2
Protein YIPF.
   
  
 0.998
yipf1
Protein YIPF.
   
  
 0.972
yipf4
Protein YIPF4; Involved in the maintenance of the Golgi structure. Belongs to the YIP1 family.
   
 
 0.962
yipf6
Protein YIPF6.
   
 
 0.915
yipf5
Protein YIPF5; Plays a role in transport between endoplasmic reticulum and Golgi; Belongs to the YIP1 family.
   
 
 0.912
yif1a
Protein YIF1A; Possible role in transport between endoplasmic reticulum and Golgi; Belongs to the YIF1 family.
   
  
 0.894
slc38a7
Putative sodium-coupled neutral amino acid transporter 7; Putative sodium-dependent amino acid/proton antiporter. Belongs to the amino acid/polyamine transporter 2 family.
   
  
 0.842
yif1b
Protein YIF1B.
   
  
 0.745
tmppe
Transmembrane protein with metallophosphoesterase domain; Belongs to the metallophosphoesterase superfamily. LOC643853 family.
    
 
 0.719
ube2e1
Ubiquitin-conjugating enzyme E2E 1; Belongs to the ubiquitin-conjugating enzyme family.
      
 0.703
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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