Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl53Mitochondrial ribosomal protein L53. (108 aa)    
Predicted Functional Partners:
mrps33
Mitochondrial ribosomal protein S33.
   
 
 0.948
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.948
mrpl11
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.889
mrpl12
Mitochondrial ribosomal protein L12.
   
 
 0.881
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.880
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.874
mrps18a
Mitochondrial ribosomal protein S18A.
   
 
 0.854
mrpl41
39S ribosomal protein L41, mitochondrial; Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle (By similarity).
   
 
 0.851
mrpl1
Mitochondrial ribosomal protein L1.
   
 
 0.836
mrpl4
39S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL4 family.
   
 
 0.829
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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