STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irx7Iroquois homeodomain transcription factor Ziro7. (314 aa)    
Predicted Functional Partners:
barhl2
BarH-class homeodomain transcription factor.
   
 
 0.744
nme2a
Nucleoside diphosphate kinase.
   
  
 0.647
pbx1a
Pre-B-cell leukemia transcription factor 1a.
    
 
 0.626
lmo4b
LIM domain only 4, like.
   
 
 0.586
pkdcca
Protein kinase domain-containing, cytoplasmic a.
      
 0.581
ckmt1
Creatine kinase, mitochondrial 1; Belongs to the ATP:guanido phosphotransferase family.
      
 0.566
dlx4b
Homeobox protein Dlx4b; During larvae development, may be important for neurocranium morphogenesis.
   
 
 0.563
crygn2
Gamma-crystallin N-B; Crystallins are the dominant structural components of the vertebrate eye lens.
   
  
 0.499
noto
Notochord homeobox.
   
 
 0.498
trps1
Trichorhinophalangeal syndrome I.
    
 
 0.493
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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