Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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Score
scnm1Sodium channel modifier 1; Plays a role in alternative splicing of pre-mRNAs, possibly by contributing to the selection of non-consensus donor sites. (249 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat-containing 7.
    
 
 0.912
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.820
prpf8
Pre-mRNA-processing factor 8.
    
 
 0.814
rnf113a
Zinc finger protein 183-like 1.
   
 
 0.799
sf3b2
Splicing factor 3b, subunit 2.
    
   0.787
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.787
sf3b3
Splicing factor 3B subunit 3; Involved in pre-mRNA splicing as a component of the splicing factor SF3B complex, a constituent of the spliceosome. SF3B complex is required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12- dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mR [...]
    
   0.787
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.744
mrpl27
Mitochondrial ribosomal protein L27.
      
 0.731
aar2
AAR2-splicing factor.
      
 0.722
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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