Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
txlnaZgc:162882 protein. (514 aa)    
Predicted Functional Partners:
stx4
Syntaxin 4; Belongs to the syntaxin family.
   
 0.917
stx3a
Syntaxin 3A; Belongs to the syntaxin family.
    
 0.916
lmcd1
LIM and cysteine-rich domains 1.
      
 0.718
ggcx
Gamma-glutamyl carboxylase.
      
 0.687
BNC1
Basonuclin 1.
      
 0.560
zfyve26
Zinc finger, FYVE domain-containing 26.
      
 0.506
ndc80
Kinetochore protein NDC80 homolog; Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore. The NDC80 complex synergistically enhances the affinity of the SKA1 complex for microtubules and may allow the NDC80 complex to track depolymerizing microtubules. May play a role in chromosome congression and may be essential for the end-on attachment of the kinetochores t [...]
   
   0.496
gpr107
G protein-coupled receptor 107.
      
 0.486
suds3
Suppressor of defective silencing 3 homolog (SDS3, S. cerevisiae).
      
 0.468
zfand6
Zinc finger, AN1-type domain 6.
    
 
 0.464
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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