Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zbtb20Zinc finger and BTB domain-containing 20. (687 aa)    
Predicted Functional Partners:
sox5
SRY-box transcription factor 5.
    
 
 0.727
nup35
Nucleoporin NUP35; Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors (By similarity); Belongs to the Nup35 family.
      
 0.701
zhx2a
Zinc fingers and homeoboxes 2a.
    
 
 0.649
pvalb6
Parvalbumin isoform 4b; Belongs to the parvalbumin family.
    
 
 0.623
tango2
Transport and golgi organization 2 homolog (Drosophila).
      
 0.612
TIMM21
Si:dkey-118j18.1.
      
 0.602
zbtb25
Zinc finger and BTB domain-containing 25.
      
 0.594
btbd3a
BTB (POZ) domain-containing 3a.
      
 0.589
E9QFY7_DANRE
Si:dkey-167k11.5.
    
 0.560
CCDC134
Coiled-coil domain containing 134.
    
 0.560
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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