STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo7aLIM domain 7a. (1826 aa)    
Predicted Functional Partners:
afdna
Afadin, adherens junction formation factor a.
   
0.908
actn4
Actinin, alpha 4.
   
  0.839
actn3b
Actinin alpha 3b.
   
 0.785
emd
Emerin (Emery-Dreifuss muscular dystrophy).
    
 
 0.740
pdlim3b
PDZ and LIM domain 3b.
    
 
 0.700
pdlim2
PDZ and LIM domain 2 (mystique).
    
 
 0.609
pdlim3a
PDZ and LIM domain 3a.
    
 
 0.608
pdlim4
PDZ and LIM domain 4.
    
 
 0.607
pdlim5a
PDZ and LIM domain 5a.
    
 
 0.599
FBXO48
Si:dkey-202b17.4.
      
 0.598
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.