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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem248Transmembrane protein 248. (315 aa)    
Predicted Functional Partners:
dctn4
Dynactin 4.
  
    0.500
kctd7
BTB/POZ domain-containing protein KCTD7.
 
    
 0.471
rb1cc1
RB1-inducible coiled-coil 1.
  
    0.460
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
 
 
    0.456
skp1
S-phase kinase-associated protein 1A; Belongs to the SKP1 family.
  
   
 0.437
mkxb
Mohawk homeobox b.
  
     0.420
mkxa
Homeobox protein mohawk A.
  
     0.416
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.