Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ERC1Si:dkey-222l13.1. (1093 aa)    
Predicted Functional Partners:
rims2a
Regulating synaptic membrane exocytosis 2a.
   
 
 0.907
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.907
rims3
Regulating synaptic membrane exocytosis 3.
   
 
 0.825
dbn1
Drebrin 1.
    
 
 0.710
yeats4
YEATS domain-containing 4.
    
 
 0.640
zgc:172139
Zgc:172139.
    
 
 0.635
pclob
Piccolo presynaptic cytomatrix protein b.
   
 
 0.625
rims1b
Regulating synaptic membrane exocytosis 1b.
   
 
 0.620
rims1a
Regulating synaptic membrane exocytosis 1a.
   
 
 0.620
ppfia4
PTPRF-interacting protein alpha 4.
   
 
 0.612
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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