STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnni2a.3Troponin I type 2a (skeletal, fast), tandem duplicate 3. (176 aa)    
Predicted Functional Partners:
scaf1
SR-related CTD-associated factor 1.
      
 0.877
tnnt3b
Troponin T type 3b (skeletal, fast).
 
 
 0.798
tnnt1
Troponin T type 1 (skeletal, slow).
 
 
 0.750
tnnt2a
Troponin T type 2a (cardiac).
 
 
 0.736
tnnt2e
Novel slow skeletal troponin T family protein.
 
 0.731
tnnt2b
Troponin T type 2b (cardiac).
 
 0.724
myhz2
Myosin, heavy polypeptide 2, fast muscle-specific; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.713
tpm1
Tropomyosin 1 (alpha); Belongs to the tropomyosin family.
   
 0.682
mylz3
Fast skeletal muscle myosin light polypeptide 3.
   
 0.669
tnnt3a
Troponin T type 3a (skeletal, fast).
 
 
 0.669
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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