STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmbx1bDiencephalon/mesencephalon homeobox protein 1-B. (369 aa)    
Predicted Functional Partners:
aadat
Aminoadipate aminotransferase.
      
 0.747
neurod6b
Neurogenic differentiation factor 6-B; Differentiation factor required for neurogenesis (By similarity). Does not act as an upstream activator of isl1.
   
  
 0.523
abca2
ATP-binding cassette, sub-family A (ABC1), member 2.
      
 0.480
abcc3
ATP-binding cassette, sub-family C (CFTR/MRP), member 3.
   
  
 0.430
pbx4
Pre-B-cell leukemia transcription factor 4.
    
 
 0.428
zgc:66101
Serine/threonine-protein kinase SIK3 homolog.
      
 0.416
foxb1a
Fork head domain protein FKD3.
   
  
 0.413
dnmt3aa
DNA (cytosine-5-)-methyltransferase 3 alpha a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
 
 0.409
gal3st1a
Galactose-3-O-sulfotransferase 1a.
      
 0.407
acss2
Acetyl-coenzyme A synthetase.
      
 0.406
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.