STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhogbRas homolog gene family, member Gb. (191 aa)    
Predicted Functional Partners:
elmo1
Engulfment and Cell motility 1 (Ced-12 homolog, C. elegans).
    
 0.991
X1WBN8_DANRE
Si:dkey-56f14.7.
    
 0.936
elmo2
Engulfment and cell motility 2.
    
 0.914
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.892
vav2
Vav 2 guanine nucleotide exchange factor.
   
 0.876
DOCK4
Si:dkey-81e3.1; Belongs to the DOCK family.
   
 
 0.854
arhgdia
Rho GDP dissociation inhibitor (GDI) alpha.
   
 0.850
arhgdig
Rho GDP dissociation inhibitor (GDI) gamma.
   
 0.846
itsn2a
Intersectin 2a.
    
 
 0.826
itsn2b
Intersectin 2b.
    
 
 0.826
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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