Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tap2aTransporter-associated with antigen-processing, subunit type a. (725 aa)    
Predicted Functional Partners:
tapbpl
TAP-binding protein-like.
   
 
 0.995
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
  
  
0.995
tap2t
Transporter-associated with antigen-processing, subunit type t, teleost-specific.
  
  
0.994
tapbp.1
TAP-binding protein (tapasin), tandem duplicate 1.
   
 0.989
pdia7
Protein disulfide-isomerase.
   
 0.978
calr
Calreticulin.
   
 0.978
pdia3
Protein disulfide-isomerase.
   
  0.959
tapbp.2
TAP-binding protein (tapasin), tandem duplicate 2.
   
 0.952
pdia8
Protein disulfide-isomerase.
   
  0.931
calr3a
Calreticulin.
   
 0.908
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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