Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
krt18bKeratin 18b; Belongs to the intermediate filament family. (405 aa)    
Predicted Functional Partners:
and1
Actinodin1.
    
 0.608
RANBP2
Si:ch1073-55a19.2.
    
 0.565
dnajb6b
DnaJ heat shock protein family (Hsp40) member B6b.
    
 0.528
dnajb6a
DnaJ heat shock protein family (Hsp40) member B6a.
    
 0.519
she
Src homology 2 domain-containing E.
      
 0.517
ftr52p
FinTRIM family, member 52, pseudogene.
    
 0.495
zfpm2b
Zinc finger protein, FOG family member 2b.
    
 0.464
igdcc4
Immunoglobulin superfamily, DCC subclass, member 4.
      
 0.444
ppp4r1l
Protein phosphatase 4, regulatory subunit 1-like.
    
 0.417
eef1g
Elongation factor 1-gamma; Probably plays a role in anchoring the complex to other cellular components.
    
   0.413
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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