Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
col24a1LAM_G_DOMAIN domain-containing protein. (740 aa)    
Predicted Functional Partners:
col24a1-2
Collagen type XXIV alpha 1.
 
      0.723
pdzrn4
PDZ domain-containing ring finger 4.
    
 0.579
bcan
Brevican.
    
 
 0.543
fbln7
Fibulin 7.
    
 0.528
col6a1
Collagen, type VI, alpha 1.
  
0.520
LOC108191316
Collagen, type VI, alpha 3.
     
 0.515
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
 
 0.499
col6a2
Collagen, type VI, alpha 2.
  
 
0.479
adam28
ADAM metallopeptidase domain 28.
      
 0.463
col4a4
Collagen, type IV, alpha 4.
  
 
0.445
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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