Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lbx2Ladybird homeobox homolog 2 (Drosophila). (257 aa)    
Predicted Functional Partners:
kazald3
Kazal-type serine peptidase inhibitor domain 3.
      
 0.660
arl9
ADP-ribosylation factor-like 9.
    
 
 0.574
aup1
Ancient ubiquitous protein 1; May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome; Belongs to the AUP1 family.
      
 0.567
ANKRD50
Ankyrin repeat domain 50.
    
 
 0.558
dqx1
DEAQ box RNA-dependent ATPase 1.
      
 0.502
npm3
Nucleophosmin/nucleoplasmin, 3.
      
 0.489
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
      
 0.483
adad1
Adenosine deaminase domain-containing 1 (testis-specific).
    
 
 0.483
pcgf1
Polycomb group RING finger protein 1; Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.
 
 
 
 0.472
scrt1b
Scratch family zinc finger 1b.
      
 0.465
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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