STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube3dUbiquitin protein ligase E3D. (388 aa)    
Predicted Functional Partners:
cpsf3
Cleavage and polyadenylation-specific factor 3.
    
 
 0.833
pudp
Pseudouridine 5'-phosphatase.
      
 0.803
dop1a
DOP1 leucine zipper-like protein A.
      
 0.745
fcf1
FCF1 rRNA-processing protein.
      
 0.742
prss35
Protease, serine, 35.
      
 0.742
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
      
 0.713
pnpla4
Patatin-like phospholipase domain-containing 4.
      
 0.693
fbxo42
F-box protein 42.
    
 
 0.678
pip5k1ba
Phosphatidylinositol-4-phosphate 5-kinase, type I, beta a.
      
 0.662
snapc3
Small nuclear RNA-activating complex, polypeptide 3.
      
 0.662
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.