STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scamp5aSecretory carrier-associated membrane protein 5; Required for the calcium-dependent exocytosis of signal sequence-containing cytokines. Probably acts in cooperation with the SNARE machinery (By similarity); Belongs to the SCAMP family. SCAMP5 subfamily. (230 aa)    
Predicted Functional Partners:
CAMK2N1
Si:dkey-33m11.6.
      
 0.742
rab3c
RAB3C, member RAS oncogene family.
      
 0.722
camk2n1a
Calcium/calmodulin-dependent protein kinase II inhibitor 1a.
   
  
 0.656
pknox2
TALE homeodomain transcription factor Prep2.
      
 0.656
sv2a
Synaptic vesicle glycoprotein 2A.
      
 0.629
gcm2
Glial cells missing homolog 2 (Drosophila).
      
 0.563
vamp1
Vesicle-associated membrane protein 1.
   
 
 0.511
stxbp1a
Syntaxin-binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.498
nkx2.3
NK2 transcription factor related 3.
      
 0.473
barx1
Homeobox protein BarH-like 1; Transcription factor, is involved in craniofacial development, and in stomach organogenesis; Belongs to the BAR homeobox family.
      
 0.456
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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