Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
wdr13WD repeat domain 13. (482 aa)    
Predicted Functional Partners:
tbc1d25
TBC1 domain family, member 25.
   
  
 0.856
ebpl
EBP-like.
      
 0.838
tspy
Testis-specific protein Y-linked; Belongs to the nucleosome assembly protein (NAP) family.
    
 
 0.815
foxp3b
Forkhead box P3b.
      
 0.786
ftsj1
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
    
 
 0.743
gcn1
GCN1 activator of EIF2AK4.
    
 
 0.736
gphb5
Glycoprotein hormone subunit beta 5.
    
 0.695
foxp3a
Forkhead box protein.
      
 0.671
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 
 0.614
pcsk6
Proprotein convertase subtilisin/kexin type 6.
    
 
 0.567
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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