Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ccdc3aCoiled-coil domain-containing 3a. (276 aa)    
Predicted Functional Partners:
dachc
Dachshund c.
      
 0.780
luzp1
Leucine zipper protein 1.
      
 0.777
scrt1a
Scratch family zinc finger 1a.
   
  
 0.745
pbx1b
Pre-B-cell leukemia homeobox 1b.
      
 0.734
LOC100537384
POU domain protein.
      
 0.684
scrt2
Scratch family zinc finger 2.
   
  
 0.669
pou3f3b
POU domain, class 3, transcription factor 3-B; Transcription factor that may play important roles in patterning the embryonic brain.
      
 0.598
pbx1a
Pre-B-cell leukemia transcription factor 1a.
      
 0.594
ebf1a
Transcription factor COE1-A; Transcriptional activator; Belongs to the COE family.
   
  
 0.578
pou2f2a
POU domain protein.
      
 0.570
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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